Cheap flights from Manila to Tokyo from £87

The month of September is, on average, the cheapest month to fly to Tokyo from Manila, with most prices found around £125. If you aren’t able to travel during the month of September, then book flights to Tokyo from Manila during June instead. Flights to Tokyo in June, while not as cheap as those in September, still average around £133.

On average, the least expensive day to fly to Tokyo from Manila is on a Tuesday. momondo users have found tickets for Tuesday departures for as low as £167. However, this price may fluctuate depending on the airline, the season, and holidays. If your travel schedule is flexible, try to avoid departing on a Saturday because tickets tend to average around £238. These prices are subject to change though, so be sure to set up a Price Alert for flights to Tokyo.

Our most recent data shows that the best time of day to fly to Tokyo is in the evening. Flights from Manila to Tokyo during this time can be as low as £170. Flights to Tokyo are more costly at midday, with an average ticket price of £224. Departure times at midday fall within the peak daily travel times, which is why tickets can be more expensive.

Fly from Manila Ninoy Aquino Intl to Tokyo Narita for the best Manila Ninoy Aquino Intl - Tokyo flight prices

You are more likely to see cheaper flights to Tokyo from Manila when booking weeks ahead of your departure date. In general, you can expect to find flights to Tokyo for around £160 when searching weeks before you fly. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Tokyo from Manila for as low as £136 on momondo.

There are 3 cabin classes available to choose from on Manila Ninoy Aquino Intl to Tokyo flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Philippine Airlines, Jetstar Japan, and Philippines AirAsia are the most popular carriers operating from Manila Ninoy Aquino Intl to Tokyo

Philippines AirAsia, Cebu Pacific and Philippine Airlines are the top three most popular airlines that fly to Tokyo from Manila according to our data. Philippines AirAsia is the first choice among our users, with 33% of people opting to fly with this airline when travelling to Tokyo. Keep in mind that there are 7 different airlines that fly to Tokyo on a routine basis, so you have a few additional options to choose from.

Historically, on average around 10% of flights between Manila and Tokyo have experienced a delay on any given week. The average delay length over the past 12 months has been 124 minutes.

Generally, flights departing in the morning tend to experience fewer delays. Flights departing at night have, in the past, seen delays more frequently in comparison.

Thursday is statistically the day of the week that experiences the fewest delays on this flight route. Friday has historically seen more delays on average compared to the rest of the week.

According to our data, ANA have had the fewest delays on this route over the last 12 months, with about 6% of their flights experiencing any sort of delay.

As of March 2026, 22 flights take off from Manila and land in Tokyo each day. The most common flight departure time for this route is 09:00, with 50% of daily flights taking off at midday.

The number of flights available between Manila and Tokyo is 158 per week as of March 2026. The most frequent departure day is Sun, with 16% of weekly flights leaving on this day.