Cheap flights from Manila to Japan from £78

The cheapest month to fly to Japan from Manila is in September. Flight prices, which tend to average around £126, are often lower during this time because this is during the off-season. If you don’t want to visit Japan in September, then you should wait until June to fly from Manila, when ticket prices are also cheap, with an average price of £133.

The cheapest day to depart from Manila to Japan is on a Tuesday when prices can be found for as low as £162. On the other hand, Saturday is the most expensive day to depart from Manila because it is more convenient for both business and leisure travellers. As a result, prices tend to be around £236.

Our data shows that the cheapest Manila to Japan flights are usually those with departure times in the evening. Our users have found flights to Japan in the evening for as low as £168. At midday is when there is more demand to fly to Japan, so prices are often more expensive at around £224 per ticket.

Fly from Manila Ninoy Aquino Intl to Fukuoka for the best Manila Ninoy Aquino Intl - Japan flight prices

You are more likely to see cheaper flights to Japan from Manila when booking weeks ahead of your departure date. In general, you can expect to find flights to Japan for around £160 when searching weeks before you fly. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Japan from Manila for as low as £139 on momondo.

There are 3 cabin classes available to choose from on Manila Ninoy Aquino Intl to Japan flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Philippines AirAsia, Jetstar Japan, and Philippine Airlines are the most popular carriers operating from Manila Ninoy Aquino Intl to Japan

Cebu Pacific, Philippine Airlines and Philippines AirAsia are the top three most popular airlines that fly to Japan from Manila according to our data. Cebu Pacific is the first choice among our users, with 33% of people opting to fly with this airline when travelling to Japan. Keep in mind that there are 9 different airlines that fly to Japan on a routine basis, so you have a few additional options to choose from.

Historically, on average around 13% of flights between Manila and Japan have experienced a delay on any given week. The average delay length over the past 12 months has been 129 minutes.

Generally, flights departing in the morning tend to experience fewer delays. Flights departing at night have, in the past, seen delays more frequently in comparison.

Tuesday is statistically the day of the week that experiences the fewest delays on this flight route. Wednesday has historically seen more delays on average compared to the rest of the week.

According to our data, ANA have had the fewest delays on this route over the last 12 months, with about 6% of their flights experiencing any sort of delay.

23 flights are operational daily from Manila to Japan as of February 2026. The most popular departure time for this route is 09:00, with 56% of flights per day taking off at midday.

As of February 2026, there are 165 flights per week flying from Manila to Japan. The most common day of the week flights depart is Fri, with 15% of flights taking off on this day.