Cheap flights from Manila to Tokyo Prefecture from £81

In general, September is the cheapest month to fly from Manila to Tokyo Prefecture. Due to it being the ‘off-season’ during this time, you can expect flight prices to be around £126. If you don’t want to visit Tokyo Prefecture in September, then you should wait until June to fly from Manila, when ticket prices are also cheap, with an average price of £133.

The cheapest day to depart on your flight to Tokyo Prefecture is on a Tuesday when prices can be found for as low as £163. This is often the case because there is less demand to fly during this day of the week. When flying out on a Saturday, the most expensive travel day of the week, you can expect to see flight prices from Manila to Tokyo Prefecture for around £238.

Our data shows that the cheapest Manila to Tokyo Prefecture flights are usually those with departure times in the evening. Our users have found flights to Tokyo Prefecture in the evening for as low as £169. If you have a flexible travel schedule, then try to avoid flying at midday when prices are £223 on average. Flights to Tokyo Prefecture from Manila at midday are generally more expensive because this time of day is more convenient for travellers’ schedules.

Fly from Manila Ninoy Aquino Intl to Tokyo Narita for the best Manila Ninoy Aquino Intl - Tokyo Prefecture flight prices

You are more likely to see cheaper flights to Tokyo Prefecture from Manila when booking weeks ahead of your departure date. In general, you can expect to find flights to Tokyo Prefecture for around £161 when searching weeks before you fly. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Tokyo Prefecture from Manila for as low as £139 on momondo.

There are 3 cabin classes available to choose from on Manila Ninoy Aquino Intl to Tokyo Prefecture flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Philippines AirAsia, Jetstar Japan, and Philippine Airlines are the most popular carriers operating from Manila Ninoy Aquino Intl to Tokyo Prefecture

Cebu Pacific, Philippines AirAsia and Philippine Airlines are the top three most popular airlines that fly to Tokyo Prefecture from Manila according to our data. Cebu Pacific is the first choice among our users, with 32% of people opting to fly with this airline when travelling to Tokyo Prefecture. Keep in mind that there are 7 different airlines that fly to Tokyo Prefecture on a routine basis, so you have a few additional options to choose from.

The number of flights available between Manila and Tokyo Prefecture is 22 per day as of February 2026. The most frequent departure time is 09:00, with 50% of daily flights leaving at midday.

The number of flights available between Manila and Tokyo Prefecture is 160 per week as of February 2026. The most frequent departure day is Fri, with 16% of weekly flights leaving on this day.